IL_8CIV_102

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAGG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_102 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2518

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8CIV|1|AA|G|2448
8CIV|1|AA|A|2449
8CIV|1|AA|G|2450
8CIV|1|AA|G|2451
*
8CIV|1|AA|C|2496
8CIV|1|AA|U|2497
8CIV|1|AA|U|2498
8CIV|1|AA|U|2499

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA

Chain e

40S ribosomal protein S1-A