IL_8CIV_136
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8CIV|1|AA|A|3180, 8CIV|1|AA|A|3186, 8CIV|1|AA|U|3207, 8CIV|1|AA|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CIV_136 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0931
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CIV|1|AA|U|3179
8CIV|1|AA|A|3180
8CIV|1|AA|C|3181
8CIV|1|AA|G|3182
8CIV|1|AA|A|3183
8CIV|1|AA|A|3184
8CIV|1|AA|U|3185
8CIV|1|AA|A|3186
8CIV|1|AA|A|3187
8CIV|1|AA|G|3188
*
8CIV|1|AA|C|3204
8CIV|1|AA|G|3205
8CIV|1|AA|C|3206
8CIV|1|AA|U|3207
8CIV|1|AA|G|3208
8CIV|1|AA|A|3209
8CIV|1|AA|A|3210
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain E
- 60S ribosomal protein L20-A
- Chain II
- 60S ribosomal protein L6-A
- Chain LL
- RPL9A isoform 1
- Chain PP
- 60S ribosomal protein L14-A
- Chain R
- 60S ribosomal protein L33-A
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