IL_8CIV_169

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CIV|1|c|U|144, 8CIV|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_169 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1814

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CIV|1|c|G|142
8CIV|1|c|G|143
8CIV|1|c|U|144
8CIV|1|c|A|145
8CIV|1|c|U|146
8CIV|1|c|A|147
8CIV|1|c|A|148
8CIV|1|c|C|149
*
8CIV|1|c|G|165
8CIV|1|c|C|166
8CIV|1|c|U|167
8CIV|1|c|A|168
8CIV|1|c|A|169
8CIV|1|c|U|170
8CIV|1|c|A|171
8CIV|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A