IL_8CIV_173

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGAUAAUG*CAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_173 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.1522

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8CIV|1|c|A|213
8CIV|1|c|G|214
8CIV|1|c|A|215
8CIV|1|c|U|216
8CIV|1|c|A|217
8CIV|1|c|A|218
8CIV|1|c|U|242
8CIV|1|c|G|243
*
8CIV|1|c|C|250
8CIV|1|c|A|251
8CIV|1|c|U|252

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A

Chain o

40S ribosomal protein S11-A