IL_8CIV_210

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_210 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0881

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8CIV|1|c|G|1111
8CIV|1|c|G|1112
8CIV|1|c|A|1113
8CIV|1|c|G|1114
8CIV|1|c|U|1115
8CIV|1|c|A|1116
8CIV|1|c|U|1117
8CIV|1|c|G|1118
*
8CIV|1|c|U|1129
8CIV|1|c|G|1130
8CIV|1|c|A|1131
8CIV|1|c|A|1132
8CIV|1|c|A|1133
8CIV|1|c|C|1134

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Z

60S ribosomal protein L41

Chain z

40S ribosomal protein S23-A