IL_8CIV_235

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

G(OMC)CC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_235 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1063

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CIV|1|c|G|1638
8CIV|1|c|OMC|1639
8CIV|1|c|C|1640
8CIV|1|c|C|1641
*
8CIV|1|c|G|1760
8CIV|1|c|U|1761
8CIV|1|c|A|1762
8CIV|1|c|A|1763
8CIV|1|c|C|1764

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Bb

Transfer RNA; tRNA

Chain Dd

Messenger RNA

Chain Z

60S ribosomal protein L41