IL_8CIV_254

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8CIV|1|AA|A2M|2281, 8CIV|1|AA|C|2287, 8CIV|1|AA|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_254 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0719

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8CIV|1|AA|C|2277
8CIV|1|AA|5MC|2278
8CIV|1|AA|A|2279
8CIV|1|AA|A2M|2280
8CIV|1|AA|A2M|2281
8CIV|1|AA|U|2282
8CIV|1|AA|G|2283
8CIV|1|AA|C|2284
8CIV|1|AA|C|2285
8CIV|1|AA|U|2286
8CIV|1|AA|C|2287
8CIV|1|AA|OMG|2288
*
8CIV|1|AA|C|2304
8CIV|1|AA|G|2305
8CIV|1|AA|C|2306
8CIV|1|AA|G|2307

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41

Chain c

Small subunit ribosomal RNA; SSU rRNA