IL_8CKU_032

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_032 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8CKU|1|AA|U|834
8CKU|1|AA|G|835
8CKU|1|AA|A|836
8CKU|1|AA|A|837
8CKU|1|AA|G|838
*
8CKU|1|AA|U|855
8CKU|1|AA|G|856
8CKU|1|AA|G|857
8CKU|1|AA|A|858
8CKU|1|AA|G|859

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain EE

60S ribosomal protein L2-A

Chain b

60S ribosomal protein L43-A