IL_8CKU_100
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 8CKU|1|AA|G|2522, 8CKU|1|AA|G|2585, 8CKU|1|AA|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_100 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.1279
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8CKU|1|AA|A|2520
8CKU|1|AA|U|2521
8CKU|1|AA|G|2522
8CKU|1|AA|A|2523
8CKU|1|AA|A|2524
8CKU|1|AA|G|2525
8CKU|1|AA|C|2526
*
8CKU|1|AA|G|2584
8CKU|1|AA|G|2585
8CKU|1|AA|G|2586
8CKU|1|AA|U|2587
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L25
- Chain KK
- 60S ribosomal protein L8-A
Coloring options: