IL_8CKU_120

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8CKU|1|AA|A|3142, 8CKU|1|AA|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_120 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.154

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8CKU|1|AA|C|3004
8CKU|1|AA|A|3005
8CKU|1|AA|A|3006
8CKU|1|AA|U|3007
*
8CKU|1|AA|A|3139
8CKU|1|AA|G|3140
8CKU|1|AA|A|3141
8CKU|1|AA|A|3142
8CKU|1|AA|C|3143
8CKU|1|AA|G|3144

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain FF

60S ribosomal protein L3