IL_8CKU_139

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8CKU|1|AA|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_139 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.1383

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8CKU|1|AA|U|3332
8CKU|1|AA|G|3333
8CKU|1|AA|U|3334
8CKU|1|AA|A|3335
8CKU|1|AA|A|3336
8CKU|1|AA|G|3337
*
8CKU|1|AA|C|3367
8CKU|1|AA|U|3368
8CKU|1|AA|G|3369
8CKU|1|AA|A|3370
8CKU|1|AA|G|3371

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain I

60S ribosomal protein L24-A

Chain P

60S ribosomal protein L31-A