IL_8CKU_166

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CKU|1|c|U|144, 8CKU|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_166 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1998

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CKU|1|c|G|142
8CKU|1|c|G|143
8CKU|1|c|U|144
8CKU|1|c|A|145
8CKU|1|c|U|146
8CKU|1|c|A|147
8CKU|1|c|A|148
8CKU|1|c|C|149
*
8CKU|1|c|G|165
8CKU|1|c|C|166
8CKU|1|c|U|167
8CKU|1|c|A|168
8CKU|1|c|A|169
8CKU|1|c|U|170
8CKU|1|c|A|171
8CKU|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A