IL_8CKU_184
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_184 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1517
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8CKU|1|c|A|550
8CKU|1|c|G|551
8CKU|1|c|G|552
8CKU|1|c|G|553
8CKU|1|c|C|554
8CKU|1|c|A|555
8CKU|1|c|A|556
8CKU|1|c|G|557
*
8CKU|1|c|C|587
8CKU|1|c|U|588
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S30-A
- Chain f
- 40S ribosomal protein S2
- Chain m
- 40S ribosomal protein S9-A
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