IL_8CKU_207

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_207 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1202

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8CKU|1|c|G|1111
8CKU|1|c|G|1112
8CKU|1|c|A|1113
8CKU|1|c|G|1114
8CKU|1|c|U|1115
8CKU|1|c|A|1116
8CKU|1|c|U|1117
8CKU|1|c|G|1118
*
8CKU|1|c|U|1129
8CKU|1|c|G|1130
8CKU|1|c|A|1131
8CKU|1|c|A|1132
8CKU|1|c|A|1133
8CKU|1|c|C|1134

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Z

RPL41A isoform 1

Chain z

40S ribosomal protein S23-A