IL_8CKU_223
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- AAUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 8CKU|1|c|A|1346, 8CKU|1|c|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_223 not in the Motif Atlas
- Homologous match to IL_4V88_456
- Geometric discrepancy: 0.2753
- The information below is about IL_4V88_456
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_76458.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CKU|1|c|A|1345
8CKU|1|c|A|1346
8CKU|1|c|U|1347
8CKU|1|c|A|1348
*
8CKU|1|c|U|1377
8CKU|1|c|U|1378
8CKU|1|c|C|1379
8CKU|1|c|U|1380
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 7
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain g
- RPS3 isoform 1
- Chain s
- 40S ribosomal protein S16-A
- Chain w
- 40S ribosomal protein S20
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