IL_8CKU_255

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8CKU|1|AA|A2M|2281, 8CKU|1|AA|C|2287, 8CKU|1|AA|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_255 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0966

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8CKU|1|AA|C|2277
8CKU|1|AA|5MC|2278
8CKU|1|AA|A|2279
8CKU|1|AA|A2M|2280
8CKU|1|AA|A2M|2281
8CKU|1|AA|U|2282
8CKU|1|AA|G|2283
8CKU|1|AA|C|2284
8CKU|1|AA|C|2285
8CKU|1|AA|U|2286
8CKU|1|AA|C|2287
8CKU|1|AA|OMG|2288
*
8CKU|1|AA|C|2304
8CKU|1|AA|G|2305
8CKU|1|AA|C|2306
8CKU|1|AA|G|2307

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain Z

RPL41A isoform 1

Chain c

Small subunit ribosomal RNA; SSU rRNA