3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GAC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_001 not in the Motif Atlas
Homologous match to IL_8C3A_001
Geometric discrepancy: 0.2334
The information below is about IL_8C3A_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CMJ|1|AA|G|5
8CMJ|1|AA|A|6
8CMJ|1|AA|C|7
*
8CMJ|1|CC|G|152
8CMJ|1|CC|U|153
8CMJ|1|CC|C|154

Current chains

Chain AA
25S ribosomal RNA
Chain CC
5.8S ribosomal RNA

Nearby chains

Chain J
60S ribosomal protein L25
Chain KK
60S ribosomal protein L8-A
Chain QQ
60S ribosomal protein L15-A

Coloring options:


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