IL_8CMJ_001
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GAC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GAC,GUC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_001 not in the Motif Atlas
- Homologous match to IL_8C3A_001
- Geometric discrepancy: 0.2334
- The information below is about IL_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CMJ|1|AA|G|5
8CMJ|1|AA|A|6
8CMJ|1|AA|C|7
*
8CMJ|1|CC|G|152
8CMJ|1|CC|U|153
8CMJ|1|CC|C|154
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain J
- 60S ribosomal protein L25
- Chain KK
- 60S ribosomal protein L8-A
- Chain QQ
- 60S ribosomal protein L15-A
Coloring options: