IL_8CMJ_013
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GUU*AGUGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_013 not in the Motif Atlas
- Geometric match to IL_5T83_002
- Geometric discrepancy: 0.3733
- The information below is about IL_5T83_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_22373.1
- Basepair signature
- cWW-L-R-cSH-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CMJ|1|AA|G|176
8CMJ|1|AA|U|177
8CMJ|1|AA|U|178
*
8CMJ|1|AA|A|238
8CMJ|1|AA|G|239
8CMJ|1|AA|U|240
8CMJ|1|AA|G|241
8CMJ|1|AA|C|242
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain OO
- 60S ribosomal protein L13-A
- Chain T
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L37-A
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