IL_8CMJ_030

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAA*U(OMU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_030 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1421

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8CMJ|1|AA|G|826
8CMJ|1|AA|A|827
8CMJ|1|AA|A|828
*
8CMJ|1|AA|U|897
8CMJ|1|AA|OMU|898
8CMJ|1|AA|U|899

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain S

60S ribosomal protein L34-A

Chain V

60S ribosomal protein L37-A