IL_8CMJ_048

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_048 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2692

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8CMJ|1|AA|C|1069
8CMJ|1|AA|U|1070
8CMJ|1|AA|U|1071
8CMJ|1|AA|G|1072
*
8CMJ|1|AA|C|1086
8CMJ|1|AA|G|1087
8CMJ|1|AA|U|1088
8CMJ|1|AA|G|1089

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain N

60S ribosomal protein L29