IL_8CMJ_055
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CAC*GUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CAC,GUG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_055 not in the Motif Atlas
- Geometric match to IL_5C5W_002
- Geometric discrepancy: 0.1415
- The information below is about IL_5C5W_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
8CMJ|1|AA|C|1183
8CMJ|1|AA|A|1184
8CMJ|1|AA|C|1185
*
8CMJ|1|AA|G|1321
8CMJ|1|AA|U|1322
8CMJ|1|AA|G|1323
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 60S ribosomal protein L20-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain PP
- 60S ribosomal protein L14-A
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