IL_8CMJ_070
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GAUA*UGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_070 not in the Motif Atlas
- Homologous match to IL_8C3A_070
- Geometric discrepancy: 0.3083
- The information below is about IL_8C3A_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15698.1
- Basepair signature
- cWW-tSH-cSH-cWW
- Number of instances in this motif group
- 9
Unit IDs
8CMJ|1|AA|G|1618
8CMJ|1|AA|A|1619
8CMJ|1|AA|U|1620
8CMJ|1|AA|A|1621
*
8CMJ|1|AA|U|1824
8CMJ|1|AA|G|1825
8CMJ|1|AA|C|1826
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain W
- 60S ribosomal protein L38
Coloring options: