IL_8CMJ_079

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_079 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.2088

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8CMJ|1|AA|U|1702
8CMJ|1|AA|U|1703
8CMJ|1|AA|A|1704
8CMJ|1|AA|U|1705
8CMJ|1|AA|C|1706
8CMJ|1|AA|A|1707
*
8CMJ|1|AA|U|1737
8CMJ|1|AA|C|1738
8CMJ|1|AA|U|1739
8CMJ|1|AA|U|1740
8CMJ|1|AA|A|1741
8CMJ|1|AA|U|1742
8CMJ|1|AA|G|1743

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L34-A

Chain b

60S ribosomal protein L43-A