IL_8CMJ_085
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8CMJ|1|AA|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_085 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1112
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CMJ|1|AA|C|1918
8CMJ|1|AA|G|1919
8CMJ|1|AA|U|1920
8CMJ|1|AA|A|1921
8CMJ|1|AA|A|1922
8CMJ|1|AA|C|1923
*
8CMJ|1|AA|G|1928
8CMJ|1|AA|G|1929
8CMJ|1|AA|A|1930
8CMJ|1|AA|U|1931
8CMJ|1|AA|A|1932
8CMJ|1|AA|A|1933
8CMJ|1|AA|G|1934
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L41
- Chain b
- 60S ribosomal protein L43-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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