IL_8CMJ_093

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8CMJ|1|AA|A|2207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_093 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.353

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8CMJ|1|AA|G|2206
8CMJ|1|AA|A|2207
8CMJ|1|AA|A|2208
8CMJ|1|AA|U|2209
8CMJ|1|AA|G|2210
*
8CMJ|1|AA|C|2235
8CMJ|1|AA|G|2236
8CMJ|1|AA|C|2237

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain c

Small subunit ribosomal RNA; SSU rRNA