IL_8CMJ_094

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_094 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1664

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8CMJ|1|AA|U|2211
8CMJ|1|AA|C|2212
8CMJ|1|AA|A|2213
8CMJ|1|AA|A|2214
8CMJ|1|AA|A|2215
8CMJ|1|AA|G|2216
8CMJ|1|AA|U|2217
*
8CMJ|1|AA|A|2228
8CMJ|1|AA|A|2229
8CMJ|1|AA|C|2230
8CMJ|1|AA|C|2231
8CMJ|1|AA|A|2232
8CMJ|1|AA|A|2233
8CMJ|1|AA|G|2234

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L36-A