IL_8CMJ_110

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UUU*A(OMG)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_110 not in the Motif Atlas

Geometric match to IL_1L9A_003

Geometric discrepancy: 0.1551

The information below is about IL_1L9A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8CMJ|1|AA|U|2766
8CMJ|1|AA|U|2767
8CMJ|1|AA|U|2768
*
8CMJ|1|AA|A|2790
8CMJ|1|AA|OMG|2791
8CMJ|1|AA|A|2792

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain M

60S ribosomal protein L28

Chain a

60S ribosomal protein L42-A