IL_8CMJ_116

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_116 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.1814

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8CMJ|1|AA|U|2835
8CMJ|1|AA|C|2836
8CMJ|1|AA|A|2837
8CMJ|1|AA|A|2838
8CMJ|1|AA|G|2839
*
8CMJ|1|AA|C|2849
8CMJ|1|AA|G|2850
8CMJ|1|AA|A|2851
8CMJ|1|AA|C|2852
8CMJ|1|AA|A|2853

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain MM

60S ribosomal protein L10

Chain Y

Ubiquitin-60S ribosomal protein L40