IL_8CMJ_156
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 8CMJ|1|BB|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_156 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1317
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8CMJ|1|BB|A|84
8CMJ|1|BB|G|85
8CMJ|1|BB|U|86
8CMJ|1|BB|G|87
*
8CMJ|1|BB|C|94
8CMJ|1|BB|A|95
8CMJ|1|BB|U|96
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 60S ribosomal protein L20-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain MM
- 60S ribosomal protein L10
Coloring options: