IL_8CMJ_158

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

8CMJ|1|CC|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_158 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.1577

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8CMJ|1|CC|U|64
8CMJ|1|CC|A|65
8CMJ|1|CC|A|66
*
8CMJ|1|CC|U|93
8CMJ|1|CC|C|94
8CMJ|1|CC|G|95
8CMJ|1|CC|A|96

Current chains

Chain CC

5.8S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain K

60S ribosomal protein L26-A

Chain T

60S ribosomal protein L35-A

Chain V

60S ribosomal protein L37-A