IL_8CMJ_169

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8CMJ|1|c|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_169 not in the Motif Atlas

Geometric match to IL_4WF9_098

Geometric discrepancy: 0.364

The information below is about IL_4WF9_098

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8CMJ|1|c|U|113
8CMJ|1|c|C|114
8CMJ|1|c|G|115
8CMJ|1|c|U|116
*
8CMJ|1|c|A|300
8CMJ|1|c|A|301

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A