IL_8CMJ_175

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UUAU*AUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUAU,AUAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_175 not in the Motif Atlas

Geometric match to IL_8C3A_018

Geometric discrepancy: 0.3901

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8CMJ|1|c|U|208
8CMJ|1|c|U|209
8CMJ|1|c|A|210
8CMJ|1|c|U|211
*
8CMJ|1|c|A|254
8CMJ|1|c|U|255
8CMJ|1|c|A|256
8CMJ|1|c|A|257

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A