3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
8CMJ|1|c|C|1096, 8CMJ|1|c|U|1098, 8CMJ|1|c|G|1100
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_208 not in the Motif Atlas
Homologous match to IL_4V88_437
Geometric discrepancy: 0.169
The information below is about IL_4V88_437
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62898.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8CMJ|1|c|C|1034
8CMJ|1|c|G|1035
8CMJ|1|c|A|1036
*
8CMJ|1|c|U|1095
8CMJ|1|c|C|1096
8CMJ|1|c|U|1097
8CMJ|1|c|U|1098
8CMJ|1|c|U|1099
8CMJ|1|c|G|1100
8CMJ|1|c|G|1101

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 3
40S ribosomal protein S27-A
Chain f
40S ribosomal protein S2
Chain o
40S ribosomal protein S11-A
Chain p
40S ribosomal protein S13
Chain y
40S ribosomal protein S22-A
Chain z
40S ribosomal protein S23-A

Coloring options:


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