IL_8CMJ_211

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_211 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1302

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8CMJ|1|c|G|1111
8CMJ|1|c|G|1112
8CMJ|1|c|A|1113
8CMJ|1|c|G|1114
8CMJ|1|c|U|1115
8CMJ|1|c|A|1116
8CMJ|1|c|U|1117
8CMJ|1|c|G|1118
*
8CMJ|1|c|U|1129
8CMJ|1|c|G|1130
8CMJ|1|c|A|1131
8CMJ|1|c|A|1132
8CMJ|1|c|A|1133
8CMJ|1|c|C|1134

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41

Chain z

40S ribosomal protein S23-A