IL_8CMJ_262
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_262 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.1058
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8CMJ|1|AA|G|1444
8CMJ|1|AA|U|1445
8CMJ|1|AA|A|1446
8CMJ|1|AA|G|1447
8CMJ|1|AA|U|1448
8CMJ|1|AA|A2M|1449
8CMJ|1|AA|OMG|1450
*
8CMJ|1|AA|C|2354
8CMJ|1|AA|G|2355
8CMJ|1|AA|A|2356
8CMJ|1|AA|A|2357
8CMJ|1|AA|A|2358
8CMJ|1|AA|C|2359
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GG
- 60S ribosomal protein L4-A
Coloring options: