3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GUAGU(A2M)(OMG)*CGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_262 not in the Motif Atlas
Homologous match to IL_8P9A_289
Geometric discrepancy: 0.1058
The information below is about IL_8P9A_289
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8CMJ|1|AA|G|1444
8CMJ|1|AA|U|1445
8CMJ|1|AA|A|1446
8CMJ|1|AA|G|1447
8CMJ|1|AA|U|1448
8CMJ|1|AA|A2M|1449
8CMJ|1|AA|OMG|1450
*
8CMJ|1|AA|C|2354
8CMJ|1|AA|G|2355
8CMJ|1|AA|A|2356
8CMJ|1|AA|A|2357
8CMJ|1|AA|A|2358
8CMJ|1|AA|C|2359

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain B
60S ribosomal protein L17-A
Chain CC
5.8S ribosomal RNA; 5.8S rRNA
Chain GG
60S ribosomal protein L4-A

Coloring options:


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