IL_8CMJ_265
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CGGAAUUG*CGGAGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8CMJ|1|AA|U|1716, 8CMJ|1|AA|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_265 not in the Motif Atlas
- Geometric match to IL_7JRS_002
- Geometric discrepancy: 0.2988
- The information below is about IL_7JRS_002
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
8CMJ|1|AA|C|1711
8CMJ|1|AA|G|1712
8CMJ|1|AA|G|1713
8CMJ|1|AA|A|1714
8CMJ|1|AA|A|1715
8CMJ|1|AA|U|1716
8CMJ|1|AA|U|1717
8CMJ|1|AA|G|1718
*
8CMJ|1|AA|C|1726
8CMJ|1|AA|G|1727
8CMJ|1|AA|G|1728
8CMJ|1|AA|A|1729
8CMJ|1|AA|G|1730
8CMJ|1|AA|A|1731
8CMJ|1|AA|U|1732
8CMJ|1|AA|G|1733
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain L
- 60S ribosomal protein L27-A
- Chain O
- 60S ribosomal protein L30
- Chain S
- 60S ribosomal protein L34-A
- Chain b
- 60S ribosomal protein L43-A
- Chain p
- 40S ribosomal protein S13
Coloring options: