IL_8CMJ_275

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CGG*UUUG

Length

7 nucleotides

Bulged bases

8CMJ|1|AA|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_275 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2764

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8CMJ|1|AA|C|3324
8CMJ|1|AA|G|3325
8CMJ|1|AA|G|3326
*
8CMJ|1|AA|U|3380
8CMJ|1|AA|U|3381
8CMJ|1|AA|U|3382
8CMJ|1|AA|G|3383

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain P

60S ribosomal protein L31-A