3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CGG*UUUG
Length
7 nucleotides
Bulged bases
8CMJ|1|AA|U|3382
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_275 not in the Motif Atlas
Geometric match to IL_5ML7_010
Geometric discrepancy: 0.2764
The information below is about IL_5ML7_010
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

8CMJ|1|AA|C|3324
8CMJ|1|AA|G|3325
8CMJ|1|AA|G|3326
*
8CMJ|1|AA|U|3380
8CMJ|1|AA|U|3381
8CMJ|1|AA|U|3382
8CMJ|1|AA|G|3383

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain FF
60S ribosomal protein L3
Chain P
60S ribosomal protein L31-A

Coloring options:


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