IL_8CMJ_275
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CGG*UUUG
- Length
- 7 nucleotides
- Bulged bases
- 8CMJ|1|AA|U|3382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_275 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.2764
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8CMJ|1|AA|C|3324
8CMJ|1|AA|G|3325
8CMJ|1|AA|G|3326
*
8CMJ|1|AA|U|3380
8CMJ|1|AA|U|3381
8CMJ|1|AA|U|3382
8CMJ|1|AA|G|3383
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain FF
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L31-A
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