IL_8CMJ_277
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CAUG*UGG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_277 not in the Motif Atlas
- Homologous match to IL_8P9A_389
- Geometric discrepancy: 0.2694
- The information below is about IL_8P9A_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15698.3
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8CMJ|1|c|C|270
8CMJ|1|c|A|271
8CMJ|1|c|U|272
8CMJ|1|c|G|273
*
8CMJ|1|c|U|283
8CMJ|1|c|G|284
8CMJ|1|c|G|285
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain j
- 40S ribosomal protein S6-A
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