IL_8CMJ_280

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

(OMG)UGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

8CMJ|1|c|A|579, 8CMJ|1|c|U|581, 8CMJ|1|c|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_280 not in the Motif Atlas

Homologous match to IL_8P9A_404

Geometric discrepancy: 0.2438

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CMJ|1|c|OMG|562
8CMJ|1|c|U|563
8CMJ|1|c|G|564
8CMJ|1|c|C|565
8CMJ|1|c|C|566
8CMJ|1|c|A|567
8CMJ|1|c|G|568
*
8CMJ|1|c|C|575
8CMJ|1|c|G|576
8CMJ|1|c|G|577
8CMJ|1|c|OMU|578
8CMJ|1|c|A|579
8CMJ|1|c|A|580
8CMJ|1|c|U|581
8CMJ|1|c|U|582
8CMJ|1|c|C|583

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain Aa

Elongation factor 2

Chain g

RPS3 isoform 1

Chain z

40S ribosomal protein S23-A