IL_8CMJ_295

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8CMJ|1|c|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_295 not in the Motif Atlas

Homologous match to IL_8CRE_432

Geometric discrepancy: 0.1647

The information below is about IL_8CRE_432

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8CMJ|1|c|G|868
8CMJ|1|c|A|869
8CMJ|1|c|C|870
*
8CMJ|1|c|G|957
8CMJ|1|c|U|958
8CMJ|1|c|U|959
8CMJ|1|c|U|960

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S27-A

Chain p

40S ribosomal protein S13