IL_8CRE_105
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGGAG*CGCCGGUGAAAUACCAC
- Length
- 22 nucleotides
- Bulged bases
- 8CRE|1|1|G|2459, 8CRE|1|1|U|2465, 8CRE|1|1|C|2468
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_105 not in the Motif Atlas
- Homologous match to IL_8C3A_105
- Geometric discrepancy: 0.0348
- The information below is about IL_8C3A_105
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_58809.1
- Basepair signature
- cWW-tSS-L-R-L-R-L-R-L-cWW-L-L-R-L-R-L-L-R
- Number of instances in this motif group
- 1
Unit IDs
8CRE|1|1|G|2443
8CRE|1|1|G|2444
8CRE|1|1|G|2445
8CRE|1|1|A|2446
8CRE|1|1|G|2447
*
8CRE|1|1|C|2454
8CRE|1|1|G|2455
8CRE|1|1|C|2456
8CRE|1|1|C|2457
8CRE|1|1|G|2458
8CRE|1|1|G|2459
8CRE|1|1|U|2460
8CRE|1|1|G|2461
8CRE|1|1|A|2462
8CRE|1|1|A|2463
8CRE|1|1|A|2464
8CRE|1|1|U|2465
8CRE|1|1|A|2466
8CRE|1|1|C|2467
8CRE|1|1|C|2468
8CRE|1|1|A|2469
8CRE|1|1|C|2470
Current chains
- Chain 1
- 25S
Nearby chains
- Chain l1
- Ribosomal protein
Coloring options: