IL_8CRE_216

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_216 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0359

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8CRE|1|AS|G|1440
8CRE|1|AS|U|1441
8CRE|1|AS|A|1442
8CRE|1|AS|G|1443
8CRE|1|AS|U|1444
8CRE|1|AS|A|1445
8CRE|1|AS|G|1446
*
8CRE|1|AS|C|2332
8CRE|1|AS|G|2333
8CRE|1|AS|A|2334
8CRE|1|AS|A|2335
8CRE|1|AS|A|2336
8CRE|1|AS|C|2337

Current chains

Chain AS

25S

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

60S ribosomal protein L4-B

Chain BK

Ribosomal protein L22