IL_8CRE_222

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8CRE|1|AS|U|1625, 8CRE|1|AS|U|1811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_222 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.1331

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8CRE|1|AS|U|1623
8CRE|1|AS|C|1624
8CRE|1|AS|U|1625
8CRE|1|AS|U|1626
8CRE|1|AS|C|1627
*
8CRE|1|AS|G|1807
8CRE|1|AS|G|1808
8CRE|1|AS|A|1809
8CRE|1|AS|A|1810
8CRE|1|AS|U|1811
8CRE|1|AS|A|1812

Current chains

Chain AS

25S

Nearby chains

Chain BU

60S ribosomal protein L27