IL_8CRX_011

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8CRX|1|A|U|174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0842

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8CRX|1|A|G|148
8CRX|1|A|G|149
8CRX|1|A|A|150
8CRX|1|A|U|151
8CRX|1|A|A|152
8CRX|1|A|A|153
8CRX|1|A|C|154
*
8CRX|1|A|G|169
8CRX|1|A|C|170
8CRX|1|A|U|171
8CRX|1|A|A|172
8CRX|1|A|A|173
8CRX|1|A|U|174
8CRX|1|A|A|175
8CRX|1|A|C|176

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain T

30S ribosomal protein S20