IL_8CRX_012
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- UAUCAG*CUUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8CRX|1|A|U|246, 8CRX|1|A|U|282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRX_012 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.147
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.5
- Basepair signature
- cWW-cSS-tSS-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CRX|1|A|U|244
8CRX|1|A|A|245
8CRX|1|A|U|246
8CRX|1|A|C|247
8CRX|1|A|A|248
8CRX|1|A|G|249
*
8CRX|1|A|C|279
8CRX|1|A|U|280
8CRX|1|A|U|281
8CRX|1|A|U|282
8CRX|1|A|G|283
8CRX|1|A|A|284
8CRX|1|A|C|285
8CRX|1|A|G|286
Current chains
- Chain A
- RNA (1537-MER)
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
- Chain X
- 30S ribosomal protein bS22
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