IL_8CRX_039

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8CRX|1|A|C|918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_039 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8CRX|1|A|G|917
8CRX|1|A|C|918
8CRX|1|A|A|919
*
8CRX|1|A|U|1367
8CRX|1|A|U|1368
8CRX|1|A|C|1369
8CRX|1|A|C|1370
8CRX|1|A|C|1371

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain C

Transfer RNA; tRNA

Chain I

30S ribosomal protein S7

Chain J

30S ribosomal protein S9