IL_8CRX_054

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUGG*CGAAUC

Length

10 nucleotides

Bulged bases

8CRX|1|A|G|1243, 8CRX|1|A|A|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_054 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1228

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8CRX|1|A|G|1241
8CRX|1|A|U|1242
8CRX|1|A|G|1243
8CRX|1|A|G|1244
*
8CRX|1|A|C|1263
8CRX|1|A|G|1264
8CRX|1|A|A|1265
8CRX|1|A|A|1266
8CRX|1|A|U|1267
8CRX|1|A|C|1268

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain G

30S ribosomal protein S3

Chain M

30S ribosomal protein S10

Chain S

30S ribosomal protein S14 type Z