IL_8CRX_056

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_056 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0812

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8CRX|1|A|C|1289
8CRX|1|A|G|1290
8CRX|1|A|G|1291
8CRX|1|A|A|1292
8CRX|1|A|U|1293
8CRX|1|A|U|1294
*
8CRX|1|A|A|1315
8CRX|1|A|U|1316
8CRX|1|A|G|1317
8CRX|1|A|A|1318
8CRX|1|A|A|1319
8CRX|1|A|G|1320

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain N

30S ribosomal protein S13