IL_8CRX_057

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

8CRX|1|A|A|1490

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_057 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8CRX|1|A|C|1386
8CRX|1|A|5MC|1387
8CRX|1|A|G|1388
*
8CRX|1|A|C|1488
8CRX|1|A|A|1489
8CRX|1|A|A|1490
8CRX|1|A|G|1491

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain C

Transfer RNA; tRNA

Chain X

30S ribosomal protein bS22

Chain Y

32MF mRNA