IL_8CRX_064

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_064 not in the Motif Atlas

Homologous match to IL_4LFB_063

Geometric discrepancy: 0.071

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8CRX|1|A|G|1422
8CRX|1|A|C|1423
8CRX|1|A|C|1424
*
8CRX|1|A|G|1451
8CRX|1|A|U|1452
8CRX|1|A|C|1453

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain T

30S ribosomal protein S20

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain o

50S ribosomal protein L19